Assembly source

Current data includes 473 assemblies for Pectobacterium species downloaded from NCBI Assembly database and internal assemblies provided by the collaborators. Metadata for all NCBI assemblies was downloaded as XML from Assembly and BioSample databases using Eutils tools provided by NCBI.

NCBI internal QC summary

This sunburst chart shows following QC columns (innermost to outermost order):

• Assembly: Total NCBI assemblies in the dataset (n = 450)
• ExclFromRefSeq: Whether assembly was excluded from the RefSeq
• Anomalous: If an assembly was detected as anomalous
• Replaced: Whether the assembly was replaced with an updated accession
• Taxonomy check status: internal taxonomy check performed by NCBI using ANI

NCBI assembly taxanomy check status

Reference genomes summary

Species

Host

Isolation source: (Top 25)

Environmental medium

N-contigs

N-contigs (filtered)

N50

L50

#contigs vs N50

#contigs vs L50

Histogram of Single Copy BUSCO

single copy BUSCO vs N50