Row1

Assembly source

Current data includes 473 assemblies for Pectobacterium species downloaded from NCBI Assembly database and internal assemblies provided by the collaborators. Metadata for all NCBI assemblies was downloaded as XML from Assembly and BioSample databases using Eutils tools provided by NCBI.

Row2

NCBI internal QC summary

This sunburst chart shows following QC columns (innermost to outermost order):

  • Assembly: Total NCBI assemblies in the dataset (n = 450)
  • ExclFromRefSeq: Whether assembly was excluded from the RefSeq
  • Anomalous: If an assembly was detected as anomalous
  • Replaced: Whether the assembly was replaced with an updated accession
  • Taxonomy check status: internal taxonomy check performed by NCBI using ANI

Sunburst chart

NCBI assembly taxanomy check status

Row2.5

Reference genomes summary

Row3

Species

Row4

Geographical location

Row5

Host

Isolation source: (Top 25)

Environmental medium

Row6

N-contigs

N-contigs (filtered)

Row7

N50

L50

Row8

#contigs vs N50

#contigs vs L50

Row9

Histogram of Single Copy BUSCO

single copy BUSCO vs N50